| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 1 | 1 | 1 | Tidewater | Michael Conforto | OF |
| 2 | 1 | 2 | Elmjack (from Greensboro through Jonesboro) |
Lance McCullers | P |
| 3 | 1 | 3 | Tampa | Blake Snell (prospect) |
P |
| 4 | 1 | 4 | Green Bay | Erasmo Ramirez | P |
| 5 | 1 | 5 | East Coast (from Durham) |
Odubel Herrera | OF |
| 6 | 1 | 6 | Louisiana | Dansby Swanson (prospect) |
SS |
| 7 | 1 | 7 | Arizona | Joe Ross | P |
| 8 | 1 | 8 | Bay Area | Nathan Karns | P |
| 9 | 1 | 9 | Glab | Robbie Ray | P |
| 10 | 1 | 10 | Stamford | Taylor Jungmann | P |
| 11 | 1 | 11 | Elmjack | Greg Bird | 1B |
| 12 | 1 | 12 | Long Island | Eddie Rosario | OF |
| 13 | 1 | 13 | East Coast | Alex Rodriguez | 3B |
| 14 | 1 | 14 | Chappaqua | Billy Burns | OF |
| 15 | 1 | 15 | Mokena | Mark Canha | 1B |
| 16 | 1 | 16 | Freeport | AJ Reed (prospect) |
1B |
| 17 | 1 | 17 | San Diego | Delino Deshields | OF |
| 18 | 1 | 18 | Westchester | Cameron Maybin | OF |
| 19 | 1 | 19 | Beantown | Cody Anderson | P |
| 20 | 1 | 20 | Durham (from Coney Island) |
Frank Montas | P |
| 21 | 1 | 21 | Gulf Breeze | Nick Ahmed | SS |
| 22 | 1 | 22 | Brooklyn | Roberto Osuna | P |
| 23 | 1 | 23 | Coney Island (from Wildwood) |
Orlando Arcia (prospect) |
SS |
| 24 | 1 | 24 | Greensboro | Ketel Marte | SS |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 25 | 2 | 1 | Tidewater | Brenden Rogers (prospect) |
SS |
| 26 | 2 | 2 | Jonesboro | Jimmy Parades | 3B |
| 27 | 2 | 3 | Tampa | Byung-ho Park (prospect) |
1B |
| 28 | 2 | 4 | Green Bay | Giovanny Urshela | 3B |
| 29 | 2 | 5 | Durham | Johnny Giavotella | 2B |
| 30 | 2 | 6 | Louisiana | Gary Sanchez | C |
| 31 | 2 | 7 | Arizona | Carlos Perez | C |
| 32 | 2 | 8 | Bay Area | Chris Heston | P |
| 33 | 2 | 9 | Glab | Carson Smith | P |
| 34 | 2 | 10 | Louisiana (from Elmjack through Stamford) |
Lewis Brinson (prospect) |
OF |
| 35 | 2 | 11 | Elmjack | Tom Murphy | C |
| 36 | 2 | 12 | Long Island | Aaron Altherr | OF |
| 37 | 2 | 13 | East Coast | Willson Contreras (prospect) |
C |
| 38 | 2 | 14 | Chappaqua | Keone Kela | P |
| 39 | 2 | 15 | Mokena | Chad Bettis | P |
| 40 | 2 | 16 | Freeport | Tyler Duffey | P |
| 41 | 2 | 17 | San Diego | Joey Butler | OF |
| 42 | 2 | 18 | Westchester | Curt Casali | C |
| 43 | 2 | 19 | Beantown | Mike Bolinger | P |
| 44 | 2 | 20 | Coney Island | Travis Shaw | 1B |
| 45 | 2 | 21 | Gulf Breeze | Brandon Moss | OF |
| 46 | 2 | 22 | Tampa (from Brooklyn) |
Max Kepler | OF |
| 47 | 2 | 23 | Wildwood | Mark Lowe | P |
| 48 | 2 | 24 | Greensboro | William Harris | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 49 | 3 | 1 | Tidewater | Jose DeLeon (prospect) |
P |
| 50 | 3 | 2 | Jonesboro | Andres Blanco | 3B |
| 51 | 3 | 3 | Tampa | Jerad Eickoff | P |
| 52 | 3 | 4 | Green Bay | Abraham Almonte | OF |
| 53 | 3 | 5 | Durham | Colin Rea | P |
| 54 | 3 | 6 | Louisiana | Vincent Velasquez | P |
| 55 | 3 | 7 | Arizona | Andrew Chafin | P |
| 56 | 3 | 8 | Bay Area | Clint Robinson | 1B |
| 57 | 3 | 9 | Louisiana (from Glab) |
Michael Lorenzen | P |
| 58 | 3 | 10 | Stamford | Erik Johnson | P |
| 59 | 3 | 11 | Elmjack | Raul Mondesi | SS |
| 60 | 3 | 12 | Long Island | Adonis Garcia | 3B |
| 61 | 3 | 13 | Brooklyn (from East Coast) |
Cameron Rupp | C |
| 62 | 3 | 14 | Chappaqua | Kevin Siegrist | P |
| 63 | 3 | 15 | Mokena | Hernan Perez | 3B |
| 64 | 3 | 16 | Freeport | Paulo Orlando | OF |
| 65 | 3 | 17 | San Diego | Preston Tucker | OF |
| 66 | 3 | 18 | Stamford (from Westchester) |
Arodys Vizcaino | P |
| 67 | 3 | 19 | Beantown | Michael Blazek | P |
| 68 | 3 | 20 | Durham (from Coney Island) |
Corey Knebel | P |
| 69 | 3 | 21 | East Coast (from Gulf Breeze) |
Alex Reyes (prospect) |
P |
| 70 | 3 | 22 | Brooklyn | Kelby Tomlinson | 2B |
| 71 | 3 | 23 | Wildwood | Ryan Madson | P |
| 72 | 3 | 24 | Greensboro | Tim Anderson (prospect) |
SS |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 73 | 4 | 1 | Tidewater | Williams Perez | P |
| 74 | 4 | 2 | Jonesboro | Adam Conley | P |
| 75 | 4 | 3 | Tampa | John Lamb | P |
| 76 | 4 | 4 | Green Bay | Edwin Jackson | P |
| 77 | 4 | 5 | Coney Island (from Durham) |
Trayce Thompson | OF |
| 78 | 4 | 6 | Louisiana | Rob Refsnyder | 2B |
| 79 | 4 | 7 | Arizona | Tommy Pham | OF |
| 80 | 4 | 8 | Bay Area | Justin Nicolino | P |
| 81 | 4 | 9 | Glab | Alex Avila | C |
| 82 | 4 | 10 | Stamford | Carter Capps | P |
| 83 | 4 | 11 | Elmjack | Nick Williams (prospect) |
OF |
| 84 | 4 | 12 | Long Island | Austin Meadows (prospect) |
OF |
| 85 | 4 | 13 | East Coast | Brandon Drury | 3B |
| 86 | 4 | 14 | Chappaqua | Franklin Gutierrez | OF |
| 87 | 4 | 15 | Mokena | Sean Gilmartin | P |
| 88 | 4 | 16 | Freeport | Zach McAllister | P |
| 89 | 4 | 17 | San Diego | Steve Clevenger | C |
| 90 | 4 | 18 | San Diego (from Westchester) |
Travis Jankowski | OF |
| 91 | 4 | 19 | Beantown | Scott Van Slyke | OF |
| 92 | 4 | 20 | Chappaqua (from Coney Island) |
Sean Newcomb (prospect) |
P |
| 93 | 4 | 21 | Gulf Breeze | Hyun-Soo Kim (prospect) |
OF |
| 94 | 4 | 22 | Brooklyn | Felipe Rivero | P |
| 95 | 4 | 23 | Wildwood | Jeff Manship | P |
| 96 | 4 | 24 | Stamford (from Greensboro) |
Richie Shaffer | 1B |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 97 | 5 | 1 | Tidewater | Xavier Cedeno | P |
| 98 | 5 | 2 | Jonesboro | Tyler Lyons | P |
| 99 | 5 | 3 | Brooklyn (from Tampa) |
Shawn Kelley | P |
| 100 | 5 | 4 | Green Bay | Jose Alvarez | P |
| 101 | 5 | 5 | Durham | Alex Blandino (prospect) |
2B |
| 102 | 5 | 6 | Louisiana | Pedro Ciriaco | 3B |
| 103 | 5 | 7 | Arizona | Steve Geltz | P |
| 104 | 5 | 8 | Bay Area | Jordan Lyles | P |
| 105 | 5 | 9 | Glab | Ivan deJesus | 2B |
| 106 | 5 | 10 | Stamford | Mychal Givens | P |
| 107 | 5 | 11 | Elmjack | Joe Blanton | P |
| 108 | 5 | 12 | Long Island | Scott Schebler | OF |
| 109 | 5 | 13 | East Coast | Ryan McMahon (prospect) |
3B |
| 110 | 5 | 14 | Tampa (from Chappaqua) |
Zach Davies | P |
| 111 | 5 | 15 | Mokena | Tony Cruz | C |
| 112 | 5 | 16 | Freeport | Tim Beckham | 2B |
| 113 | 5 | 17 | San Diego | Carlos Frias | P |
| 114 | 5 | 18 | Westchester | Trevor Gott | P |
| 115 | 5 | 19 | Chappaqua (from Beantown) |
Miguel Rojas | SS |
| 116 | 5 | 20 | Coney Island | Ivan Nova | P |
| 117 | 5 | 21 | Gulf Breeze | Mike Pelfrey | P |
| 118 | 5 | 22 | Brooklyn | Aaron Blair (prospect) |
P |
| 119 | 5 | 23 | Wildwood | Andrew Benintendl (prospect) |
OF |
| 120 | 5 | 24 | Greensboro | Wilmer Difo | 2B |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 121 | 6 | 1 | Tidewater | Arquimedes Caminero | P |
| 122 | 6 | 2 | Jonesboro | Chris Rusin | P |
| 123 | 6 | 3 | Chappaqua (from Tampa) |
Adam Duvall | OF |
| 124 | 6 | 4 | Green Bay | Kyle Lobstein | P |
| 125 | 6 | 5 | Freeport (from Durham) |
Tim Cooney | P |
| 126 | 6 | 6 | San Diego (from Louisiana) |
Yohan Flande | P |
| 127 | 6 | 7 | Arizona | J.J. Hoover | P |
| 128 | 6 | 8 | Bay Area | Jeff Francoeur | OF |
| 129 | 6 | 9 | Glab | Daniel Hudson | P |
| 130 | 6 | 10 | Stamford | Tyler Saladino | 3B |
| 131 | 6 | 11 | Elmjack | Gleyber Torres (prospect) |
SS |
| 132 | 6 | 12 | Long Island | Chris Gimenez | C |
| 133 | 6 | 13 | Long Island (from East Coast) |
Kenta Maeda (prospect) |
P |
| 134 | 6 | 14 | Beantown (from Chappaqua) |
Nolan Reimold | OF |
| 135 | 6 | 15 | Mokena | Yimi Garcia | P |
| 136 | 6 | 16 | Chappaqua (from Freeport) |
Rich Hill | P |
| 137 | 6 | 17 | San Diego | Brett Phillips (prospect) |
OF |
| 138 | 6 | 18 | Westchester | Andrew Knapp (prospect) |
C |
| 139 | 6 | 19 | Gulf Breeze (from Beantown) |
Luke Hochevar | P |
| 140 | 6 | 20 | Coney Island | Rafael Devers (prospect) |
3B |
| 141 | 6 | 21 | Gulf Breeze | Luis Avilan | P |
| 142 | 6 | 22 | Brooklyn | Michael Fulmer (prospect) |
P |
| 143 | 6 | 23 | Wildwood | Jorge Lopez | P |
| 144 | 6 | 24 | Greensboro | Franklin Barreto | SS |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 145 | 7 | 1 | Tidewater | Elian Herrera | 3B |
| 146 | 7 | 2 | Jonesboro | Neal Cotts | P |
| 147 | 7 | 3 | Tampa | Luis Garcia | P |
| 148 | 7 | 4 | Green Bay | Kyle Lohse | P |
| 149 | 7 | 5 | Coney Island (from Durham) |
Jon Moscot | P |
| 150 | 7 | 6 | Louisiana | Shane Greene | P |
| 151 | 7 | 7 | Arizona | Matt Albers | P |
| 152 | 7 | 8 | Bay Area | Jason Rogers | 1B |
| 153 | 7 | 9 | Glab | Dillon Tate (prospect) |
P |
| 154 | 7 | 10 | Stamford | Carson Fulmer (prospect) |
P |
| 155 | 7 | 11 | Mokena (from Elmjack) |
Hansel Robles | P |
| 156 | 7 | 12 | Long Island | Jesus Montero | 1B |
| 157 | 7 | 13 | East Coast | Jorge Polanco | SS |
| 158 | 7 | 14 | Chappaqua | Micah Johnson | 2B |
| 159 | 7 | 15 | Mokena | Aramis Garcia (prospect) |
C |
| 160 | 7 | 16 | Chappaqua (from Freeport) |
Miguel Almonte | P |
| 161 | 7 | 17 | San Diego | Blake Smith (prospect) |
P |
| 162 | 7 | 18 | Westchester | Trey Michalczewski (prospect) |
3B |
| 163 | 7 | 19 | Beantown | Steven Wright | P |
| 164 | 7 | 20 | Chappaqua (from Coney Island) |
Jorge Mateo (prospect) |
SS |
| 165 | 7 | 21 | Gulf Breeze | Yulieski Gurriel (prospect) |
2B |
| 166 | 7 | 22 | Brooklyn | Greg Garcia | SS |
| 167 | 7 | 23 | Wildwood | Victor Robles (prospect) |
OF |
| 168 | 7 | 24 | Greensboro | Miguel Socolovich | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 169 | 8 | 1 | Tidewater | Raimel Tapia (prospect) |
OF |
| 170 | 8 | 2 | Jonesboro | Mike Aviles | OF |
| 171 | 8 | 3 | Tampa | Christhian Adames | SS |
| 172 | 8 | 4 | Green Bay | Jason Vargas | P |
| 173 | 8 | 5 | Durham | Rob Brantly | C |
| 174 | 8 | 6 | Louisiana | Michael Saunders | OF |
| 175 | 8 | 7 | Arizona | Elias Diaz | C |
| 176 | 8 | 8 | Bay Area | Brett Wallace | 1B |
| 177 | 8 | 9 | Glab | Lourdes Gurriel Jr (prospect) |
SS |
| 178 | 8 | 10 | Stamford | Mark Appel (prospect) |
P |
| 179 | 8 | 11 | Elmjack | Chad Pinder (prospect) |
SS |
| 180 | 8 | 12 | Long Island | Trevor Brown | C |
| 181 | 8 | 13 | East Coast | Tyrell Jenkins (prospect) |
P |
| 182 | 8 | 14 | Coney Island (from Chappaqua) |
Mason Williams | OF |
| 183 | 8 | 15 | Mokena | Dominic Smith (prospect) |
1B |
| 184 | 8 | 16 | East Coast (from Freeport) |
Michael Feliz | P |
| 185 | 8 | 17 | San Diego | Pass | |
| 186 | 8 | 18 | Wildwood (from Westchester) |
Juan Nicasio | P |
| 187 | 8 | 19 | Beantown | Austin Barnes | C |
| 188 | 8 | 20 | Coney Island (from Chappaqua through Coney Island) |
Jesus Aguilar | 1B |
| 189 | 8 | 21 | Stamford (from Gulf Breeze) |
Fernando Rodriguez | P |
| 190 | 8 | 22 | Brooklyn | Mac Williamson | OF |
| 191 | 8 | 23 | Wildwood | Dalier Hinojosa | P |
| 192 | 8 | 24 | Greensboro | Mike Foltynewicz | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 193 | 9 | 1 | Tidewater | Matt Boyd | P |
| 194 | 9 | 2 | Jonesboro | Shane Peterson | OF |
| 195 | 9 | 3 | Tampa | Manny Banuelos | P |
| 196 | 9 | 4 | Green Bay | Trevor Story (prospect) |
3B |
| 197 | 9 | 5 | Durham | Sandy Leon | C |
| 198 | 9 | 6 | Louisiana | Mike Montgomery | P |
| 199 | 9 | 7 | Chappaqua (from Arizona) |
Pete OBrien | OF |
| 200 | 9 | 8 | Bay Area | Erik Goeddel | P |
| 201 | 9 | 9 | Glab | Dae-ho Park | 1B |
| 202 | 9 | 10 | Stamford | Josh Osich | P |
| 203 | 9 | 11 | Elmjack | Charlie Furbush | P |
| 204 | 9 | 12 | Long Island | Elvis Araujo | P |
| 205 | 9 | 13 | East Coast | Miguel Castro | P |
| 206 | 9 | 14 | Coney Island (from Chappaqua) |
Donovan Solano | 3B |
| 207 | 9 | 15 | Mokena | Pass | |
| 208 | 9 | 16 | Louisiana (from Mokena through Freeport) |
Slade Heathcott | OF |
| 209 | 9 | 17 | San Diego | Pass | |
| 210 | 9 | 18 | Westchester | Pedro Villareal | P |
| 211 | 9 | 19 | Beantown | Hanser Alberto | 2B |
| 212 | 9 | 20 | Coney Island | Tyler Collins | OF |
| 213 | 9 | 21 | Gulf Breeze | Jacob Diekman | P |
| 214 | 9 | 22 | Brooklyn | Pass | |
| 215 | 9 | 23 | Wildwood | Matt Duffy | 3B |
| 216 | 9 | 24 | Greensboro | Jhoulys Chacin | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 217 | 10 | 1 | Tidewater | Mallex Smith (prospect) |
OF |
| 218 | 10 | 2 | Jonesboro | Connor Gillaspie | 3B |
| 219 | 10 | 3 | Tampa | Andrew Bellatti | P |
| 220 | 10 | 4 | Green Bay | Alex Bergman (prospect) |
SS |
| 221 | 10 | 5 | Durham | David Buchanan | P |
| 222 | 10 | 6 | Louisiana | Skip Schumaker |
OF |
| 223 | 10 | 7 | Arizona | Cody A. Reed (prospect Cin.) |
P |
| 224 | 10 | 8 | Bay Area | Logan Verrett | P |
| 225 | 10 | 9 | Glab | Alexi Ogando | P |
| 226 | 10 | 10 | Stamford | Jarrett Parker | OF |
| 227 | 10 | 11 | Arizona (from Elmjack) |
Chris Hatcher | P |
| 228 | 10 | 12 | Long Island | Zack Godley | P |
| 229 | 10 | 13 | Durham (from East Coast) |
Rob Scahill | P |
| 230 | 10 | 14 | Freeport (from Chappaqua) |
Matt Belisle | P |
| 231 | 10 | 15 | Mokena | Pass | |
| 232 | 10 | 16 | Freeport | Jake Bauers (prospect) |
1B |
| 233 | 10 | 17 | Westchester (from San Diego) |
Luis Sardinas | 2B |
| 234 | 10 | 18 | Westchester | Frances Martes (prospect) |
P |
| 235 | 10 | 19 | Beantown | Lazaro Armenteos (prospect) |
OF |
| 236 | 10 | 20 | Coney Island | Mike Wright | P |
| 237 | 10 | 21 | Gulf Breeze | Craig Breslow | P |
| 238 | 10 | 22 | Brooklyn | Pass | |
| 239 | 10 | 23 | Wildwood | Brandon Morrow | P |
| 240 | 10 | 24 | Greensboro | Socrates Brito | OF |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 241 | 11 | 1 | Tidewater | Matt Andriese | P |
| 242 | 11 | 2 | Jonesboro | Ozhaino Albies (prospect) |
SS |
| 243 | 11 | 3 | Tampa | Daniel Castro | 2B |
| 244 | 11 | 4 | Green Bay | Pass | |
| 245 | 11 | 5 | Durham | Jerome Williams | P |
| 246 | 11 | 6 | Greensboro (from Louisiana) |
Cole Gillespie | OF |
| 247 | 11 | 7 | Elmjack (from Arizona) |
Nick Franklin | 2B |
| 248 | 11 | 8 | Bay Area | Clayton Blackburn (prospect) |
P |
| 249 | 11 | 9 | Glab | Tyler Thornburg | P |
| 250 | 11 | 10 | Stamford | Tony Zych | P |
| 251 | 11 | 11 | Elmjack | Nick Swisher | OF |
| 252 | 11 | 12 | Long Island | Pass | |
| 253 | 11 | 13 | Durham (from East Coast) |
Hector Neris | P |
| 254 | 11 | 14 | Coney Island (from Chappaqua) |
Bruce Rondon | P |
| 255 | 11 | 15 | Mokena | Pass | |
| 256 | 11 | 16 | Freeport | Seth Maness | P |
| 257 | 11 | 17 | San Diego | Pass | |
| 258 | 11 | 18 | Westchester | Oscar Hernandez | C |
| 259 | 11 | 19 | Beantown | Gabriel Guerrero (prospect) |
OF |
| 260 | 11 | 20 | Coney Island | Jesus Sucre | C |
| 261 | 11 | 21 | Gulf Breeze | Chris Herrmann | C |
| 262 | 11 | 22 | Brooklyn | Pass | |
| 263 | 11 | 23 | Wildwood | Cheslor Cuthbert | 3B |
| 264 | 11 | 24 | Louisiana (from Greensboro) |
Jose Urena | P |
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| XTR | 1 | ||||
| XTR | 2 | ||||
| XTR | 3 | ||||
| XTR | 4 |
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| 265 | XTR | 1 | Elmjack | Skip Schumaker | OF |
| 266 | XTR | 2 | Westchester | Charlie Morton | P |
| 267 | XTR | 3 | Elmjack | Jose Urena | P |